UMAP / t-SNE manifold embedding

Layer 3 — Biologyin the Single-Cell Biology subtree

van der Maaten-Hinton 2008 t-SNE / McInnes-Healy 2018 UMAP: nonlinear-manifold-learning for scRNA visualisation. t-SNE preserves local-neighbourhoods via heavy-tailed Student-t embedding; UMAP uses fuzzy-simplicial topology +…

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